mne.filter.filter_data

mne.filter.filter_data(data, sfreq, l_freq, h_freq, picks=None, filter_length='auto', l_trans_bandwidth='auto', h_trans_bandwidth='auto', n_jobs=1, method='fir', iir_params=None, copy=True, phase='zero', fir_window='hamming', fir_design='firwin', pad='reflect_limited', verbose=None)[source]

Filter a subset of channels.

Parameters
datandarray, shape (…, n_times)

The data to filter.

sfreqfloat

The sample frequency in Hz.

l_freqfloat | None

For FIR filters, the lower pass-band edge; for IIR filters, the upper cutoff frequency. If None the data are only low-passed.

h_freqfloat | None

For FIR filters, the upper pass-band edge; for IIR filters, the upper cutoff frequency. If None the data are only low-passed.

pickslist | slice | None

Channels to include. Slices and lists of integers will be interpreted as channel indices. None (default) will pick all channels. Currently this is only supported for 2D (n_channels, n_times) and 3D (n_epochs, n_channels, n_times) arrays.

filter_lengthstr | int

Length of the FIR filter to use (if applicable):

  • ‘auto’ (default): The filter length is chosen based on the size of the transition regions (6.6 times the reciprocal of the shortest transition band for fir_window=’hamming’ and fir_design=”firwin2”, and half that for “firwin”).

  • str: A human-readable time in units of “s” or “ms” (e.g., “10s” or “5500ms”) will be converted to that number of samples if phase="zero", or the shortest power-of-two length at least that duration for phase="zero-double".

  • int: Specified length in samples. For fir_design=”firwin”, this should not be used.

l_trans_bandwidthfloat | str

Width of the transition band at the low cut-off frequency in Hz (high pass or cutoff 1 in bandpass). Can be “auto” (default) to use a multiple of l_freq:

min(max(l_freq * 0.25, 2), l_freq)

Only used for method='fir'.

h_trans_bandwidthfloat | str

Width of the transition band at the high cut-off frequency in Hz (low pass or cutoff 2 in bandpass). Can be “auto” (default in 0.14) to use a multiple of h_freq:

min(max(h_freq * 0.25, 2.), info['sfreq'] / 2. - h_freq)

Only used for method='fir'.

n_jobsint | str

Number of jobs to run in parallel. Can be ‘cuda’ if cupy is installed properly and method=’fir’.

methodstr

‘fir’ will use overlap-add FIR filtering, ‘iir’ will use IIR forward-backward filtering (via filtfilt).

iir_paramsdict | None

Dictionary of parameters to use for IIR filtering. If iir_params is None and method=”iir”, 4th order Butterworth will be used. For more information, see mne.filter.construct_iir_filter().

copybool

If True, a copy of x, filtered, is returned. Otherwise, it operates on x in place.

phasestr

Phase of the filter, only used if method='fir'. Symmetric linear-phase FIR filters are constructed, and if phase='zero' (default), the delay of this filter is compensated for, making it non-causal. If phase=='zero-double', then this filter is applied twice, once forward, and once backward (also making it non-causal). If ‘minimum’, then a minimum-phase filter will be constricted and applied, which is causal but has weaker stop-band suppression.

New in version 0.13.

fir_windowstr

The window to use in FIR design, can be “hamming” (default), “hann” (default in 0.13), or “blackman”.

New in version 0.15.

fir_designstr

Can be “firwin” (default) to use scipy.signal.firwin(), or “firwin2” to use scipy.signal.firwin2(). “firwin” uses a time-domain design technique that generally gives improved attenuation using fewer samples than “firwin2”.

New in version 0.15.

padstr

The type of padding to use. Supports all numpy.pad() mode options. Can also be “reflect_limited”, which pads with a reflected version of each vector mirrored on the first and last values of the vector, followed by zeros. Only used for method='fir'. The default is 'reflect_limited'.

New in version 0.15.

verbosebool, str, int, or None

If not None, override default verbose level (see mne.verbose() and Logging documentation for more).

Returns
datandarray, shape (…, n_times)

The filtered data.

Notes

Applies a zero-phase low-pass, high-pass, band-pass, or band-stop filter to the channels selected by picks.

l_freq and h_freq are the frequencies below which and above which, respectively, to filter out of the data. Thus the uses are:

  • l_freq < h_freq: band-pass filter

  • l_freq > h_freq: band-stop filter

  • l_freq is not None and h_freq is None: high-pass filter

  • l_freq is None and h_freq is not None: low-pass filter

Note

If n_jobs > 1, more memory is required as len(picks) * n_times additional time points need to be temporaily stored in memory.

For more information, see the tutorials Background information on filtering and Filtering and resampling data and mne.filter.create_filter().

Examples using mne.filter.filter_data