mne.bem.make_watershed_bem

mne.bem.make_watershed_bem(subject, subjects_dir=None, overwrite=False, volume='T1', atlas=False, gcaatlas=False, preflood=None, show=False, copy=False, verbose=None)[source]

Create BEM surfaces using the FreeSurfer watershed algorithm.

Parameters
subjectstr

Subject name (required)

subjects_dirstr

Directory containing subjects data. If None use the Freesurfer SUBJECTS_DIR environment variable.

overwritebool

Write over existing files

volumestr

Defaults to T1

atlasbool

Specify the –atlas option for mri_watershed

gcaatlasbool

Use the subcortical atlas

prefloodint

Change the preflood height

showbool

Show surfaces to visually inspect all three BEM surfaces (recommended).

New in version 0.12.

copybool

If True (default False), use copies instead of symlinks for surfaces (if they do not already exist).

New in version 0.18.

verbosebool, str, int, or None

If not None, override default verbose level (see mne.verbose() and Logging documentation for more).

Notes

New in version 0.10.